Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs11471557 chr20:47284684 C/CGT 0 497 31.67 32.1 5.8 KM Plot
THCA rs114751014 chr15:72028817 A/G 4.64E-10 497 31.53 34 20 KM Plot
THCA rs11477906 chr20:47244536 TG/T 0 502 31.47 32.93 7.77 KM Plot
THCA rs11479699 chr20:47225749 GA/G 0 502 31.6 32.07 6.78 KM Plot
THCA rs11481492 chr20:47353643 A/AT 8.06E-9 503 31.47 32.9 18.22 KM Plot
THCA rs11502964 chr12:14451077 G/A 5.37E-5 497 31.42 36.93 32.45 KM Plot
THCA rs115031959 chr18:13824145 C/G 1.27E-5 501 31.42 33.4 50 KM Plot
THCA rs1151404 chr13:108858671 G/C 2.44E-6 494 31.45 31.77 24.63 KM Plot
THCA rs115159438 chr8:5004146 C/A 2.09E-5 499 31.6 27.1 28.1 KM Plot
THCA rs11547281 chr2:87003846 G/T 1.41E-9 503 32.15 27.83 20.78 KM Plot
THCA rs11549984 chr3:139258411 G/A 4.64E-5 503 31.5 33.63 19.32 KM Plot
THCA rs11574450 chr4:74847111 A/C 4.08E-8 495 31.67 31.03 23.23 KM Plot
THCA rs115800576 chr21:47748761 T/C 8.67E-6 503 31.6 32.27 11.87 KM Plot
THCA rs11600158 chr11:88070914 A/G 0 487 31.33 35.2 5.23 KM Plot
THCA rs11607237 chr11:88103303 G/A 0 494 31.3 35.2 5.23 KM Plot